This dataset includes nest abundance of American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), and Forster's terns (Sterna forsteri) in south San Francisco Bay, California by year. It also contains California gull (Larus californicus) hazing research efforts. This dataset was generated from yearly nest monitoring surveys within wetlands in south San Francisco Bay, particularly on the Don Edwards San Francisco Bay National Wildlife Refuge and the Eden Landing Ecological Reserve.